CDS

Accession Number TCMCG007C05797
gbkey CDS
Protein Id XP_009131600.1
Location 5014673..5016418
Gene LOC103856252
GeneID 103856252
Organism Brassica rapa

Protein

Length 581aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009133352.3
Definition 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category Q
Description Retinal pigment epithelial membrane protein
KEGG_TC -
KEGG_Module M00372        [VIEW IN KEGG]
KEGG_Reaction R06952        [VIEW IN KEGG]
R06953        [VIEW IN KEGG]
R09682        [VIEW IN KEGG]
KEGG_rclass RC00912        [VIEW IN KEGG]
RC01690        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
KEGG_ko ko:K09840        [VIEW IN KEGG]
EC 1.13.11.51        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko00906        [VIEW IN KEGG]
ko01100        [VIEW IN KEGG]
ko01110        [VIEW IN KEGG]
map00906        [VIEW IN KEGG]
map01100        [VIEW IN KEGG]
map01110        [VIEW IN KEGG]
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006066        [VIEW IN EMBL-EBI]
GO:0006082        [VIEW IN EMBL-EBI]
GO:0006629        [VIEW IN EMBL-EBI]
GO:0006714        [VIEW IN EMBL-EBI]
GO:0006720        [VIEW IN EMBL-EBI]
GO:0006721        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008299        [VIEW IN EMBL-EBI]
GO:0008610        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009532        [VIEW IN EMBL-EBI]
GO:0009534        [VIEW IN EMBL-EBI]
GO:0009535        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009570        [VIEW IN EMBL-EBI]
GO:0009579        [VIEW IN EMBL-EBI]
GO:0009687        [VIEW IN EMBL-EBI]
GO:0009688        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010436        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016053        [VIEW IN EMBL-EBI]
GO:0016106        [VIEW IN EMBL-EBI]
GO:0016114        [VIEW IN EMBL-EBI]
GO:0016491        [VIEW IN EMBL-EBI]
GO:0016701        [VIEW IN EMBL-EBI]
GO:0016702        [VIEW IN EMBL-EBI]
GO:0019752        [VIEW IN EMBL-EBI]
GO:0031976        [VIEW IN EMBL-EBI]
GO:0031984        [VIEW IN EMBL-EBI]
GO:0032787        [VIEW IN EMBL-EBI]
GO:0034357        [VIEW IN EMBL-EBI]
GO:0042651        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043288        [VIEW IN EMBL-EBI]
GO:0043289        [VIEW IN EMBL-EBI]
GO:0043436        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044255        [VIEW IN EMBL-EBI]
GO:0044281        [VIEW IN EMBL-EBI]
GO:0044283        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044436        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045549        [VIEW IN EMBL-EBI]
GO:0046165        [VIEW IN EMBL-EBI]
GO:0046394        [VIEW IN EMBL-EBI]
GO:0051213        [VIEW IN EMBL-EBI]
GO:0055035        [VIEW IN EMBL-EBI]
GO:0055114        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0072330        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1901615        [VIEW IN EMBL-EBI]
GO:1901617        [VIEW IN EMBL-EBI]
GO:1902644        [VIEW IN EMBL-EBI]
GO:1902645        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGTTTCTCTGCTTACAATGTCGACAAGCGGTGCTATAACATATCCTCAAGCCCAAAGTGATTTATGCATGAGGCCCATCAAAAGACAGCCGAAAATTAAATGCACGGTGCACATCGACGTAACCGACCAACCCCTAAAACGTTCTTCATTTACACCCAGAACCACTGCGACGCCGCCGCCGCAGCATAATTCCCTCCGACTAAACATCTTCCAGAAAGCGGCGGCGATTGCTATCGACGCGGCTGAGCGCGCGTTGATCTCCCACGAGAAAGATACTCCTCTTTCCAAAACCGCCGATCCAAGTGTTCAGATCGCCGGTAATTATTTTCCGGTATCGGAATGTCCCGTCCGACAGTTTCTCACCGTCGAAGGAACAATCCCTGACAGCATTGACGGAGTTTACGTCCGTAACGGCGCAAATCCAATGTTCGACCCGATCGCTGGACACCATTTATTCGACGGAGACGGAATGGTTCACGCCATTAAAATAACCAACGGTTCAGCAAGCTACGCATGCCGGTTTACAAAAACCGAGAGATTGATTCAGGAAAAACGATTGGGTAGACCGGTTTTCCCGAAAGCAATCGGGGAGCTTCACGGCCACTCGGGAATCGCACGTCTGATGCTTTTTTACGCACGTGGGCTTTGCGGTCTCGTCAACAACCAAAACGGCGTCGGAGTGGCGAATGCCGGTTTGGTTTACTTCAATAACCGGCTATTAGCAATGTCAGAAGACGATTTACCGTATCAATTAAAAATAACTCAAACCGGCGATCTCGAAACCGTTGGGCGTTACGATTTCGACGGTCAGTTAAAATCCACGATGATCGCCCACCCGAAACTCGACCCGGTTACGAAGGAGCTCCACGCGCTAAGCTACGACGTCGTGAGAAAGCCTTACTTGAAGTACTTCAGATTCTCGCCGGACGGCGTTAAATCACCGGAAGTAGAGATCCCGCTCGAGACTCCGACGATGATTCACGATTTCGCTATAACGGAGAACTTCGTGGTGATTCCGGATCAACAAGTCGTGTTCAAGCTAGGGGAGATGATGGCCGGAAACTCGCCGGTGGTTTTCGACGGCGGAAAGGTTTCGCGACTGGGGATAATGCCGAAAGACGCGACGGAGGCTTCCGAGATAATCTGGGTGAATTCGCCGGAGACGTTCTGTTTCCACCTCTGGAACGCGTGGGAATCGCCGGAGACTGAGGAAGTGGTGGTGATCGGGTCGTGTATGTCGCCGGCGGATTCTATCTTCAACGAGAGAGACGAGAGCTTGAAAAGCGTCTTGACGGAGATCAGGATAAACCTCAGGACGCGTGAATCCACGCGTCGCGCCATGTTGGTCGACGAGTTGAATTTAGAGATCGGTATGGTTAACCGAAACCGGTTAGGTAGGGAAACCCGGTTCGCGTTTCTGGCTATCGCTGATCCTTGGCCGAAAGTCTCCGGTTTCGCTAAGGTTGATCTTGTCACCGGCGAAATTGAAAAGTACGTTTATGGCGATGAGAAGTACGGCGGAGAACCATTTTTCTTGCCTAGTGGCTCCGTTGACGGTGGAGATAATGAAGATGACGGTTATATATTCTGTCACGTTCACGACGAAGAGAAAGAGACGTCGGAACTTCAGATTATTAACGCCGTTGATTTAAAGCTTGAAGCTACGATTAAACTACCGTCTAGAGTACCGTACGGTTTTCATGGTACGTTTGTGGATGCAAGTGAACTCGTGGACCAAGTATAA
Protein:  
MVSLLTMSTSGAITYPQAQSDLCMRPIKRQPKIKCTVHIDVTDQPLKRSSFTPRTTATPPPQHNSLRLNIFQKAAAIAIDAAERALISHEKDTPLSKTADPSVQIAGNYFPVSECPVRQFLTVEGTIPDSIDGVYVRNGANPMFDPIAGHHLFDGDGMVHAIKITNGSASYACRFTKTERLIQEKRLGRPVFPKAIGELHGHSGIARLMLFYARGLCGLVNNQNGVGVANAGLVYFNNRLLAMSEDDLPYQLKITQTGDLETVGRYDFDGQLKSTMIAHPKLDPVTKELHALSYDVVRKPYLKYFRFSPDGVKSPEVEIPLETPTMIHDFAITENFVVIPDQQVVFKLGEMMAGNSPVVFDGGKVSRLGIMPKDATEASEIIWVNSPETFCFHLWNAWESPETEEVVVIGSCMSPADSIFNERDESLKSVLTEIRINLRTRESTRRAMLVDELNLEIGMVNRNRLGRETRFAFLAIADPWPKVSGFAKVDLVTGEIEKYVYGDEKYGGEPFFLPSGSVDGGDNEDDGYIFCHVHDEEKETSELQIINAVDLKLEATIKLPSRVPYGFHGTFVDASELVDQV